QuickBooks alternatives for owners of several businesses and LLCs

QuickBooks Online needs a separate paid subscription for every company file. Here's how Zoho Books, Xero, FreshBooks and Wave handle several businesses under one login, what each extra entity costs, and when one set of books is enough, using each vendor's official pages. Checked .

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The short version

First question: one set of books or several?

Before you price anything, ask your accountant whether each business needs its own books. That decides whether you need one subscription or several.

Owners keep running into this. One Reddit user who manages several LLCs says "the biggest issue with QuickBooks and Xero is that they make you pay a separate subscription for each company" (r/Bookkeeping). A land developer with a separate LLC for each project was told in r/Accounting that "QBO only supports one company per subscription." In r/QuickBooks, commenters said classes in one file can work for sole proprietorships or single-member LLCs with the same owner, but corporations and partnerships need separate books, and that with separate files there's "no real consolidated view, so you end up in excel a lot."

How QuickBooks Online handles several companies

The alternatives

Wave: up to 15 businesses on one account, free on Starter

Zoho Books: per-organization pricing, five organizations per email by default

Xero: unlimited organizations and a multi-organization discount

FreshBooks: separate businesses under one login

Side by side

How each tool handles several businesses. USD per month, before tax, list prices from official US pages checked November 1, 2026.
QuickBooks OnlineZoho BooksXeroFreshBooksWave
BillingOne subscription per companyOne plan per organizationOne plan per organizationOne subscription per businessPro is per business; Starter free
How many under one loginNo limit stated in the help article we readUp to 5 organizations per email (default)"As many organizations as you like"No limit stated; 2 active trials at a timeUp to 15 business profiles
Lowest price per entitySimple Start $38Free $0 (under $50K revenue); Standard $20 ($15 annually)Early $27Lite $23Starter $0
Multi-entity discountNone listedNone listedYes, automatic (amount not published)None listedNone listed
Classes / one-entity splitClasses on Plus $140 and Advanced onlyNot covered hereNot covered hereNot covered hereNot covered here

Rough monthly cost for three LLCs

List prices after any intro offer, three separate entities, one plan each:

Our arithmetic from the published prices. It leaves out payments fees, payroll, extra users and add-ons. Plans aren't feature-equivalent, so compare features too, and confirm on each vendor's page.

Moving several companies off QuickBooks

  1. Start with one entity, ideally the simplest one, and close a full month in the new tool before you move the rest.
  2. Export each company file separately. Each QuickBooks Online company has its own data, so repeat the export for every file. See our QuickBooks Online export guide.
  3. Record intercompany balances (loans between your LLCs, shared expenses) as of the cutover date in each new set of books. Ask your accountant how they want this done.
  4. Reconnect bank feeds per entity. As in QuickBooks, each bank account connects to one entity's books.
  5. Cancel each QuickBooks subscription separately once its entity is moved.

Step-by-step guides: QuickBooks Online to Zoho Books, QuickBooks Online to Xero, QuickBooks Online to FreshBooks and QuickBooks Online to Wave.

How to choose (our suggestions)

  1. Small side businesses with simple books? Wave Starter, at $0 each, for up to 15 businesses.
  2. Several real LLCs that each need proper books, for the least money? Zoho Books Standard or Professional, and Free for any entity under $50K in revenue.
  3. Your accountant works in Xero, or each entity has many users? Xero, with the automatic multi-organization discount and no per-user fees.
  4. Mostly invoicing clients from a few service businesses? FreshBooks, one subscription per business.
  5. Brands under one legal entity? You may only need one subscription. Ask your accountant before buying several.

Compare every tool we track in QuickBooks alternatives by business type, or see the pages for freelancers, agencies and multi-currency businesses.

Sources

Prices and plan features come only from each vendor's official pages. Plans change, so confirm on the vendor's page before you buy.

Last checked: . Not tax, legal or accounting advice.

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